PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017368001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 755aa    MW: 86821.2 Da    PI: 8.9271
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017368001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.48.4e-22143226189
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        ++Yn YAkevGF+vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w+v ++ leHnH l
  GSVIVT01017368001 143 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHNHLL 226
                        69*****************************************9988.....99*********************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-19143226IPR004330FAR1 DNA binding domain
PfamPF105519.0E-34345439IPR018289MULE transposase domain
PROSITE profilePS509669.631632668IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6643670IPR006564Zinc finger, PMZ-type
PfamPF044345.7E-4644664IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MKICIRAYIK SRKTEDYLRI EPCHWTNSSQ SSNPKKSSGW PRASNIAPPP LSGPCSTSDS  60
DSGATVKSLV DGSSYLDPIF RITMEEISLS SEQVPSGEGN ETEKERDGEK TELVVQNGLT  120
QGRKEFVAPA VGMEFESYDD AYNYYNCYAK EVGFRVRVKN SWFKRNSREK YGAVLCCSSQ  180
GFKRIKDVNR LRKETRTGCP AMIRMRLVDS KRWRVLEVTL EHNHLLGAKI YKSMKKMGSG  240
TKRKLQSNSD AEVRTIKLYR ALVIDAGGNS SLNSNVKEIR KFSDHPNQLN LKKGDTQAIY  300
NYLCRMQLTN PNFFYLMDLN DEGCLRNVFW IDARSRAACG YFSDVIFFDN TYLSNKYEIP  360
LVALVGVNHH GQSVLLGCGL LAGETSESYV WLFKAWVTCM SGRTPQTIIT DRCKALQNAI  420
AEVFPRSHHR FGLSHIMKKV PEKLGGLRNY DAIRKALIKA VYESLKVIEF ESAWGFLIQR  480
FAVSDHEWLR SLFEDRARWA PVYLKDTHFA GMSSSQPGET LNPFFDRYVH KQTPLKEFLD  540
KYELALQKKH KEEALADIES RNSGPTLKTR CFFELQLSKV YTREIFKKFQ FEVEEMYSCF  600
STTQLHVDGP IIIFLVKERV LGEGNRREIR DFEVLYNRAA AEVRCICSCF NFYGYLCRHA  660
LCVLNFNGVE EIPSKYILSR WKKDYKRLYI PDHVSNNVDG TDRVQWFNQL YRSALQVVEE  720
GAISLDHYKI ALQAFDESLN RVHNVEEKPE QLKI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.37910.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4817980.0AM481798.2 Vitis vinifera contig VV78X220380.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263979.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLF6HXG30.0F6HXG3_VITVI; Putative uncharacterized protein
STRINGVIT_09s0002g07400.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6